| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_91 | 162122 | G | A | 10 | 30.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_91 | 203104 | T | C | 14 | 43.77 | CDS | Transition | 0/1 | ATP-dependent RNA helicase DEAH13 (EC 3.6.4.13) (Protein FASCIATED STEM 4) (AtFAS4) |
| Scaffold_91 | 224790 | C | T | 10 | 33.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_91 | 326511 | C | T | 12 | 61.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_91 | 348120 | A | G | 11 | 39.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_92 | 90454 | A | G | 12 | 39.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_92 | 113909 | A | G | 45 | 1294.77 | CDS | Transition | 0/1 | Aminopeptidase M1 (EC 3.4.11.2) (Alpha-aminoacylpeptide hydrolase) |
| Scaffold_92 | 113966 | T | C | 27 | 656.77 | CDS | Transition | 0/1 | Aminopeptidase M1 (EC 3.4.11.2) (Alpha-aminoacylpeptide hydrolase) |
| Scaffold_94 | 94494 | A | G | 10 | 58.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_94 | 324126 | A | G | 12 | 49.77 | CDS | Transition | 0/1 | Protein CHROMATIN REMODELING 20 (AtCHR20) (EC 3.6.4.-) (ATP-dependent helicase ATRX) (Transcriptional regulator ATRX) (X-linked helicase II) |
| Scaffold_94 | 351308 | A | G | 85 | 592.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_94 | 351972 | C | T | 117 | 1127.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_94 | 352053 | C | T | 75 | 562.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_95 | 286585 | T | C | 10 | 30.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_96 | 94000 | C | T | 10 | 39.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_96 | 112639 | A | G | 13 | 334.22 | exon | Transition | 0/1 | Unannotated |
| Scaffold_96 | 133193 | T | C | 22 | 640.41 | intron | Transition | 0/1 | Unannotated |
| Scaffold_96 | 136363 | T | C | 13 | 89.77 | CDS | Transition | 0/1 | Aldehyde dehydrogenase family 2 member B4, mitochondrial (ALDH2a) (EC 1.2.1.3) |
| Scaffold_96 | 260394 | T | C | 22 | 34.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_97 | 22032 | G | A | 13 | 211.78 | noncoding | Transition | 0/1 | Unannotated |