| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_102 | 51082 | A | G | 250 | 243.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_102 | 51417 | C | T | 250 | 55.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_102 | 76936 | T | C | 16 | 335.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_102 | 76939 | T | C | 16 | 345.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_102 | 76972 | T | C | 11 | 30.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_102 | 402518 | G | A | 16 | 49.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_103 | 21730 | G | A | 25 | 60.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_103 | 30000 | C | T | 36 | 159.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_103 | 226580 | G | A | 16 | 58.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_103 | 226582 | G | A | 16 | 58.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_104 | 131567 | C | T | 14 | 39.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_104 | 263174 | T | C | 15 | 92.77 | CDS | Transition | 0/1 | Zinc finger protein BRUTUS (Protein EMBRYO DEFECTIVE 2454) |
| Scaffold_104 | 312942 | T | C | 29 | 81.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_105 | 50996 | G | A | 10 | 156.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_105 | 200458 | C | T | 23 | 59.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_105 | 346363 | G | A | 30 | 34.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_106 | 142716 | A | G | 250 | 138.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_106 | 285791 | G | A | 16 | 52.77 | CDS | Transition | 0/1 | ABC transporter D family member 1 (ABC transporter ABCD.1) (AtABCD1) (EC 7.6.2.4) (Peroxisomal ABC transporter 1) (AtPXA1) (Protein ACETATE NON-UTILIZING 2) (Protein COMATOSE) (Protein PEROXISOME DEFECTIVE 3) (Ped3p) |
| Scaffold_106 | 285792 | A | G | 15 | 52.77 | CDS | Transition | 0/1 | ABC transporter D family member 1 (ABC transporter ABCD.1) (AtABCD1) (EC 7.6.2.4) (Peroxisomal ABC transporter 1) (AtPXA1) (Protein ACETATE NON-UTILIZING 2) (Protein COMATOSE) (Protein PEROXISOME DEFECTIVE 3) (Ped3p) |
| Scaffold_106 | 319482 | A | G | 32 | 280.77 | exon | Transition | 0/1 | Unannotated |