| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_106 | 319504 | A | G | 24 | 441.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_106 | 319613 | T | C | 31 | 762.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_106 | 337986 | G | A | 16 | 52.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_106 | 496521 | G | A | 10 | 32.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_107 | 46613 | A | G | 11 | 30.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_108 | 7278 | T | C | 16 | 83.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_108 | 34582 | T | C | 10 | 30.77 | exon | Transition | 0/1 | COMPASS-like H3K4 histone methylase component WDR5A (AtWDR5A) |
| Scaffold_108 | 169852 | A | G | 12 | 183.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_108 | 239423 | C | T | 34 | 71.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_108 | 239682 | A | G | 15 | 43.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_108 | 256830 | T | C | 10 | 39.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_109 | 109538 | T | C | 17 | 40.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_109 | 222767 | A | G | 10 | 42.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_110 | 28285 | C | T | 24 | 39.77 | exon | Transition | 0/1 | Protein SMAX1-LIKE 8 (AtSMXL8) (Protein D53-like 3) (AtD53-like 3) (Protein D53-like SMXL 8) |
| Scaffold_111 | 290954 | A | G | 60 | 30.77 | exon | Transition | 0/1 | Serine decarboxylase (AtSDC) (EC 4.1.1.-) (Protein EMBRYO DEFECTIVE 1075) (Serine decarboxylase 1) (AtSDC1) |
| Scaffold_111 | 293102 | T | C | 70 | 2247.77 | CDS | Transition | 1/1 | Serine decarboxylase (AtSDC) (EC 4.1.1.-) (Protein EMBRYO DEFECTIVE 1075) (Serine decarboxylase 1) (AtSDC1) |
| Scaffold_111 | 348649 | A | G | 15 | 33.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_112 | 10190 | T | C | 11 | 116.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_112 | 108910 | G | A | 15 | 57.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_112 | 108951 | G | A | 18 | 412.77 | exon | Transition | 0/1 | Unannotated |