| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_117 | 98046 | C | T | 22 | 68.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_117 | 242849 | A | G | 86 | 111.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_118 | 105417 | C | T | 13 | 76.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_118 | 107626 | C | T | 25 | 37.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_118 | 222374 | G | A | 20 | 114.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_118 | 358676 | A | G | 11 | 66.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_118 | 361321 | G | A | 37 | 114.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_118 | 362543 | C | T | 35 | 227.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_118 | 427771 | A | G | 10 | 39.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_119 | 1713 | A | G | 17 | 33.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_119 | 277754 | A | G | 24 | 59.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_119 | 372177 | T | C | 10 | 45.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_119 | 375751 | T | C | 46 | 171.77 | CDS | Transition | 0/1 | 3-isopropylmalate dehydratase large subunit, chloroplastic (EC 4.2.1.33) (AtLEUC) (Isopropylmalate isomerase large subunit 1) (AtIIL1) |
| Scaffold_120 | 326672 | T | C | 35 | 42.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_121 | 32267 | C | T | 14 | 52.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_121 | 38461 | A | G | 17 | 61.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_121 | 79492 | G | A | 88 | 2740.77 | noncoding | Transition | 1/1 | Unannotated |
| Scaffold_121 | 114837 | T | C | 15 | 49.77 | exon | Transition | 0/1 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 (EC 2.7.11.1) (Protein BARELY ANY MERISTEM 3) |
| Scaffold_121 | 114937 | G | A | 13 | 46.77 | exon | Transition | 0/1 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 (EC 2.7.11.1) (Protein BARELY ANY MERISTEM 3) |
| Scaffold_121 | 163004 | A | G | 15 | 112.77 | CDS | Transition | 0/1 | Unannotated |