| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_121 | 396451 | A | G | 25 | 34.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_122 | 149825 | G | A | 19 | 80.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_122 | 149826 | A | G | 19 | 83.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_122 | 152887 | C | T | 47 | 31.79 | CDS | Transition | 0/1 | Calcium-binding protein CP1 (NaCl-inducible Ca2+-binding protein) (AtCP1) |
| Scaffold_122 | 174070 | A | G | 18 | 33.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_122 | 283690 | T | C | 11 | 64.77 | CDS | Transition | 0/1 | Phosphatidylinositol 4-kinase gamma 4 (AtPI4Kgamma4) (PI-4Kgamma4) (PI4K gamma 4) (EC 2.7.1.67) (Ubiquitin-like domain kinase gamma 4) (UbDK gamma 4) |
| Scaffold_122 | 322415 | A | G | 19 | 37.77 | exon | Transition | 0/1 | GDP-L-galactose phosphorylase 1 (EC 2.7.7.69) (Protein VITAMIN C DEFECTIVE 2) |
| Scaffold_122 | 361774 | C | T | 11 | 61.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_122 | 402697 | A | G | 28 | 320.77 | CDS | Transition | 0/1 | Linoleate 13S-lipoxygenase 2-1, chloroplastic (EC 1.13.11.12) (Lipoxygenase 2-1) |
| Scaffold_122 | 418202 | G | A | 13 | 73.77 | exon | Transition | 0/1 | PP2A regulatory subunit TAP46 |
| Scaffold_123 | 311366 | T | C | 88 | 153.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_123 | 408286 | C | T | 24 | 222.77 | exon | Transition | 0/1 | G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 (EC 2.7.11.1) (Receptor-like kinase 4) (S-domain-2 (SD2) receptor kinase 2) (SD2-2) |
| Scaffold_123 | 465894 | T | C | 54 | 128.77 | CDS | Transition | 0/1 | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 (EC 2.1.1.14) (Cobalamin-independent methionine synthase 1) (AtMS1) (Vitamin-B12-independent methionine synthase 1) |
| Scaffold_123 | 478993 | C | T | 17 | 55.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_124 | 209643 | T | C | 23 | 90.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_125 | 77228 | G | A | 72 | 156.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_125 | 80362 | A | G | 250 | 785.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_126 | 88363 | T | C | 14 | 89.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_126 | 166086 | A | G | 39 | 41.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_126 | 233751 | A | G | 13 | 70.77 | exon | Transition | 0/1 | Unannotated |