| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_127 | 278548 | G | A | 44 | 219.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_127 | 416194 | C | T | 30 | 87.77 | CDS | Transition | 0/1 | Linoleate 13S-lipoxygenase 3-1, chloroplastic (EC 1.13.11.12) |
| Scaffold_129 | 178315 | G | A | 18 | 51.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_129 | 178331 | G | A | 20 | 113.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_129 | 194969 | C | T | 31 | 57.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_129 | 203393 | G | A | 15 | 33.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_129 | 350055 | A | G | 17 | 40.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_129 | 526953 | A | G | 13 | 58.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_129 | 569810 | C | T | 27 | 35.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_130 | 47916 | A | G | 18 | 43.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_130 | 108870 | G | A | 21 | 372.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_130 | 108910 | G | A | 18 | 51.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_130 | 108913 | G | A | 18 | 211.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_130 | 137566 | T | C | 17 | 205.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_130 | 396135 | A | G | 59 | 277.77 | CDS | Transition | 0/1 | Putative disease resistance protein At4g10780 |
| Scaffold_130 | 398640 | A | G | 99 | 1698.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_130 | 400616 | G | A | 12 | 76.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_130 | 406895 | A | G | 12 | 150.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_130 | 406957 | A | G | 11 | 118.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_130 | 407607 | A | G | 18 | 290.77 | CDS | Transition | 0/1 | Unannotated |