| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_142 | 593450 | G | A | 11 | 52.77 | exon | Transition | 0/1 | Probable inactive purple acid phosphatase 2 |
| Scaffold_143 | 76925 | A | G | 10 | 55.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_143 | 166338 | T | C | 19 | 43.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_143 | 318227 | T | C | 11 | 86.77 | noncoding | Transition | 0/1 | LOB domain-containing protein 38 (ASYMMETRIC LEAVES 2-like protein 40) (AS2-like protein 40) |
| Scaffold_143 | 495746 | T | C | 37 | 1107.77 | exon | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_143 | 495752 | C | T | 39 | 1183.77 | exon | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_144 | 50285 | T | C | 29 | 90.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_144 | 262704 | T | C | 13 | 36.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_145 | 404439 | T | C | 87 | 162.77 | exon | Transition | 0/1 | Probable mediator of RNA polymerase II transcription subunit 37e (Heat shock 70 kDa protein 1) (Heat shock cognate 70 kDa protein 1) (Heat shock cognate protein 70-1) (AtHsc70-1) (Heat shock protein 70-1) (AtHsp70-1) (Protein EARLY-RESPONSIVE TO DEHYDRATI |
| Scaffold_145 | 438980 | A | G | 19 | 54.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_146 | 110953 | G | A | 16 | 225.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_146 | 111095 | T | C | 27 | 442.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_146 | 111260 | A | G | 12 | 168.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_146 | 111479 | A | G | 18 | 288.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_146 | 111548 | C | T | 23 | 49.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_146 | 111838 | G | A | 12 | 144.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_146 | 111915 | G | A | 31 | 386.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_146 | 111975 | T | C | 11 | 75.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_146 | 112038 | T | C | 11 | 116.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_146 | 112086 | G | A | 18 | 111.77 | CDS | Transition | 0/1 | Unannotated |