| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_146 | 112291 | A | G | 30 | 811.78 | intron | Transition | 1/1 | Unannotated |
| Scaffold_146 | 112364 | T | C | 21 | 422.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_146 | 112385 | G | A | 12 | 66.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_146 | 177967 | A | G | 29 | 493.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_146 | 198816 | A | G | 14 | 58.77 | CDS | Transition | 0/1 | Serine hydroxymethyltransferase 2, mitochondrial (SHMT2) (EC 2.1.2.1) (Glycine hydroxymethyltransferase 2) (Serine methylase 2) |
| Scaffold_146 | 311296 | A | G | 14 | 123.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_146 | 312647 | T | C | 16 | 37.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_146 | 326013 | G | A | 52 | 48.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_147 | 26248 | G | A | 11 | 103.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_147 | 26302 | A | G | 54 | 553.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_147 | 230240 | A | G | 24 | 48.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_147 | 485175 | A | G | 23 | 95.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_147 | 558212 | A | G | 12 | 42.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_147 | 580114 | A | G | 11 | 104.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_148 | 2718 | G | A | 22 | 40.77 | CDS | Transition | 0/1 | Probable protein S-acyltransferase 22 (EC 2.3.1.225) (Probable palmitoyltransferase At1g69420) (Zinc finger DHHC domain-containing protein At1g69420) |
| Scaffold_148 | 2719 | A | G | 22 | 40.77 | CDS | Transition | 0/1 | Probable protein S-acyltransferase 22 (EC 2.3.1.225) (Probable palmitoyltransferase At1g69420) (Zinc finger DHHC domain-containing protein At1g69420) |
| Scaffold_148 | 93024 | C | T | 19 | 111.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_148 | 109820 | A | G | 13 | 30.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_148 | 109867 | A | G | 15 | 78.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_148 | 128314 | T | C | 28 | 31.77 | exon | Transition | 0/1 | Unannotated |