| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_148 | 133483 | A | G | 12 | 92.77 | CDS | Transition | 0/1 | DEAD-box ATP-dependent RNA helicase 3, chloroplastic (EC 3.6.4.13) (Protein EMBRYO DEFECTIVE 1138) |
| Scaffold_148 | 330254 | C | T | 15 | 40.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_149 | 16698 | G | A | 26 | 90.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_149 | 19349 | T | C | 12 | 46.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_149 | 30956 | T | C | 16 | 49.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_149 | 129342 | C | T | 26 | 34.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_149 | 234774 | T | C | 250 | 8559.77 | exon | Transition | 1/1 | Protein RALF-like 33 |
| Scaffold_149 | 287304 | T | C | 40 | 303.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_149 | 287463 | G | A | 22 | 56.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_149 | 288566 | T | C | 20 | 49.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_149 | 288567 | C | T | 20 | 49.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_149 | 413638 | A | G | 10 | 52.77 | CDS | Transition | 0/1 | Serine/threonine-protein phosphatase 5 (EC 3.1.3.16) |
| Scaffold_149 | 432990 | C | T | 19 | 474.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_149 | 432996 | T | C | 14 | 265.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_150 | 68272 | A | G | 19 | 55.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_150 | 173403 | C | T | 46 | 137.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_150 | 185694 | C | T | 21 | 80.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_150 | 262152 | A | G | 86 | 1774.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_150 | 262181 | A | G | 113 | 2722.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_150 | 262224 | C | T | 105 | 160.77 | CDS | Transition | 0/1 | Unannotated |