| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_172 | 537198 | A | G | 12 | 33.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_172 | 542018 | T | C | 16 | 71.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_172 | 544574 | G | A | 27 | 40.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_172 | 559068 | G | A | 12 | 52.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_172 | 599576 | C | T | 25 | 66.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_172 | 633782 | A | G | 22 | 43.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_172 | 688042 | T | C | 88 | 189.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_173 | 17560 | A | G | 23 | 59.77 | CDS | Transition | 0/1 | Chaperone protein ClpB3, chloroplastic (ATP-dependent Clp protease ATP-binding subunit ClpB homolog 3) (Casein lytic proteinase B3) (Protein ALBINO OR PALE GREEN 6) |
| Scaffold_173 | 80335 | T | C | 15 | 81.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_173 | 92755 | C | T | 15 | 61.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_173 | 271235 | A | G | 11 | 89.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_173 | 320435 | A | G | 14 | 39.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_173 | 427789 | G | A | 12 | 171.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_173 | 428054 | T | C | 10 | 107.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_173 | 428073 | G | A | 12 | 138.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_173 | 428081 | G | A | 12 | 135.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_173 | 429337 | T | C | 24 | 34.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_173 | 429338 | A | G | 24 | 34.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_174 | 19802 | T | C | 12 | 39.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_174 | 65943 | C | T | 15 | 36.77 | exon | Transition | 0/1 | Unannotated |