| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_26 | 1017522 | G | C | 33 | 36.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_26 | 1146877 | C | A | 14 | 308.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_26 | 1367617 | T | G | 12 | 67.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_26 | 1648914 | G | C | 25 | 37.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_26 | 1648915 | A | T | 25 | 37.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_26 | 1712852 | A | C | 15 | 33.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_26 | 1766153 | T | A | 11 | 58.77 | CDS | Transversion | 0/1 | Uncharacterized TPR repeat-containing protein At1g05150 |
| Scaffold_26 | 1851913 | C | A | 19 | 46.77 | CDS | Transversion | 0/1 | Eukaryotic initiation factor 4A-1 (eIF-4A-1) (EC 3.6.4.13) (ATP-dependent RNA helicase eIF4A-1) (DEAD-box ATP-dependent RNA helicase 4) |
| Scaffold_26 | 1990181 | T | G | 23 | 34.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_27 | 203686 | A | C | 10 | 30.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_27 | 319381 | T | G | 10 | 87.77 | exon | Transversion | 0/1 | Lysine-specific demethylase REF6 (EC 1.14.11.-) (Jumonji domain-containing protein 12) (Lysine-specific histone demethylase REF6) (Protein RELATIVE OF EARLY FLOWERING 6) |
| Scaffold_27 | 319417 | C | G | 12 | 190.77 | exon | Transversion | 0/1 | Lysine-specific demethylase REF6 (EC 1.14.11.-) (Jumonji domain-containing protein 12) (Lysine-specific histone demethylase REF6) (Protein RELATIVE OF EARLY FLOWERING 6) |
| Scaffold_27 | 348016 | G | T | 16 | 49.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_27 | 495357 | G | T | 37 | 56.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_27 | 591853 | G | C | 49 | 186.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_27 | 643357 | T | A | 22 | 37.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_27 | 817878 | T | A | 20 | 325.77 | CDS | Transversion | 0/1 | FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16) |
| Scaffold_27 | 819872 | A | C | 34 | 413.77 | CDS | Transversion | 0/1 | FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16) |
| Scaffold_27 | 820020 | T | G | 26 | 85.77 | CDS | Transversion | 0/1 | FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16) |
| Scaffold_27 | 990162 | A | T | 38 | 39.77 | CDS | Transversion | 0/1 | Unannotated |