| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_180 | 156040 | G | A | 10 | 81.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_180 | 156052 | T | C | 10 | 78.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_180 | 156373 | T | C | 15 | 30.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_180 | 294223 | T | C | 27 | 59.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_180 | 498844 | T | C | 20 | 49.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_181 | 419109 | T | C | 22 | 365.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_181 | 425670 | G | A | 20 | 540.78 | CDS | Transition | 0/1 | Calcium-dependent protein kinase 1 (OsCDPK1) (OsCPK1) (EC 2.7.11.1) |
| Scaffold_181 | 471955 | T | C | 16 | 37.77 | exon | Transition | 0/1 | Probable UDP-arabinopyranose mutase 4 (EC 5.4.99.30) (Reversibly glycosylated polypeptide 4) (AtRGP4) (UDP-L-arabinose mutase 4) |
| Scaffold_181 | 482871 | C | T | 12 | 187.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_181 | 483055 | T | C | 19 | 34.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_181 | 539012 | T | C | 14 | 344.56 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_181 | 539020 | T | C | 14 | 347.22 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_181 | 589433 | T | C | 13 | 33.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_181 | 619466 | T | C | 15 | 49.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_181 | 643962 | T | C | 14 | 83.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_181 | 676797 | G | A | 20 | 68.77 | CDS | Transition | 0/1 | Auxin transport protein BIG (Protein ATTENUATED SHADE AVOIDANCE 1) (Protein CORYMBOSA1) (Protein DARK OVER-EXPRESSION OF CAB 1) (Protein LOW PHOSPHATE-RESISTANT ROOT 1) (Protein TRANSPORT INHIBITOR RESPONSE 3) (Protein UMBRELLA 1) |
| Scaffold_181 | 678121 | G | A | 43 | 72.77 | CDS | Transition | 0/1 | Auxin transport protein BIG (Protein ATTENUATED SHADE AVOIDANCE 1) (Protein CORYMBOSA1) (Protein DARK OVER-EXPRESSION OF CAB 1) (Protein LOW PHOSPHATE-RESISTANT ROOT 1) (Protein TRANSPORT INHIBITOR RESPONSE 3) (Protein UMBRELLA 1) |
| Scaffold_181 | 685889 | T | C | 10 | 58.77 | CDS | Transition | 0/1 | Auxin transport protein BIG (Protein ATTENUATED SHADE AVOIDANCE 1) (Protein CORYMBOSA1) (Protein DARK OVER-EXPRESSION OF CAB 1) (Protein LOW PHOSPHATE-RESISTANT ROOT 1) (Protein TRANSPORT INHIBITOR RESPONSE 3) (Protein UMBRELLA 1) |
| Scaffold_181 | 692185 | G | A | 24 | 31.77 | CDS | Transition | 0/1 | Auxin transport protein BIG (Protein ATTENUATED SHADE AVOIDANCE 1) (Protein CORYMBOSA1) (Protein DARK OVER-EXPRESSION OF CAB 1) (Protein LOW PHOSPHATE-RESISTANT ROOT 1) (Protein TRANSPORT INHIBITOR RESPONSE 3) (Protein UMBRELLA 1) |
| Scaffold_181 | 853375 | A | G | 14 | 33.77 | CDS | Transition | 0/1 | DNA-directed RNA polymerase II subunit 2 (DNA-directed RNA polymerase II 135 kDa polypeptide) (DNA-directed RNA polymerase II subunit RPB2) (RNA polymerase II subunit 2) (RNA polymerase II subunit B2) (EC 2.7.7.6) (Protein EMBRYO DEFECTIVE 1989) |