| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_211 | 35283 | A | G | 13 | 55.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_213 | 3706 | G | A | 152 | 1032.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_214 | 1933 | C | T | 18 | 69.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_224 | 69023 | G | A | 18 | 66.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_231 | 73257 | T | C | 28 | 34.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_234 | 1304 | T | C | 10 | 42.77 | CDS | Transition | 0/1 | Extra-large guanine nucleotide-binding protein 1 (Extra-large GTP-binding protein 1) (Extra-large G-protein 1) |
| Scaffold_237 | 17498 | T | C | 11 | 49.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_237 | 70960 | T | C | 11 | 87.77 | CDS | Transition | 0/1 | Lysine-specific demethylase JMJ30 (AtJMJ30) (EC 1.14.11.-) (JmjC domain-containing protein 30) (Jumonji domain-containing protein 5) (AtJMJD5) |
| Scaffold_239 | 1274 | G | A | 10 | 30.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_239 | 75654 | A | G | 250 | 233.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_240 | 26101 | G | A | 16 | 34.77 | CDS | Transition | 0/1 | ABC transporter I family member 20 (ABC transporter ABCI.20) (AtABCI20) (GCN-related protein 3) (Non-intrinsic ABC protein 9) |
| Scaffold_243 | 15764 | T | C | 16 | 34.77 | exon | Transition | 0/1 | Protein LHCP TRANSLOCATION DEFECT |
| Scaffold_244 | 56328 | A | G | 28 | 224.77 | CDS | Transition | 0/1 | Zinc finger CCCH domain-containing protein 40 (OsC3H40) |
| Scaffold_244 | 56368 | G | A | 24 | 238.77 | CDS | Transition | 0/1 | Zinc finger CCCH domain-containing protein 40 (OsC3H40) |
| Scaffold_244 | 56556 | C | T | 40 | 368.77 | CDS | Transition | 0/1 | Zinc finger CCCH domain-containing protein 40 (OsC3H40) |
| Scaffold_244 | 56559 | G | A | 44 | 370.77 | CDS | Transition | 0/1 | Zinc finger CCCH domain-containing protein 40 (OsC3H40) |
| Scaffold_244 | 56612 | A | G | 18 | 91.77 | CDS | Transition | 0/1 | Zinc finger CCCH domain-containing protein 40 (OsC3H40) |
| Scaffold_244 | 56752 | C | T | 16 | 181.77 | CDS | Transition | 0/1 | Zinc finger CCCH domain-containing protein 40 (OsC3H40) |
| Scaffold_244 | 56753 | A | G | 16 | 189.77 | CDS | Transition | 0/1 | Zinc finger CCCH domain-containing protein 40 (OsC3H40) |
| Scaffold_244 | 56843 | A | G | 15 | 224.77 | CDS | Transition | 0/1 | Unannotated |