| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_244 | 70798 | A | G | 12 | 376.28 | CDS | Transition | 1/1 | Unannotated |
| Scaffold_245 | 61120 | T | C | 13 | 83.77 | CDS | Transition | 0/1 | Dicer-like protein 4 (EC 3.1.26.-) |
| Scaffold_246 | 33232 | G | A | 10 | 118.77 | exon | Transition | 0/1 | Zinc finger protein CONSTANS-LIKE 10 |
| Scaffold_251 | 83845 | A | G | 31 | 53.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_252 | 9978 | T | C | 26 | 37.77 | intron | Transition | 0/1 | Exonuclease V, chloroplastic (Exo V) (EC 3.1.-.-) |
| Scaffold_254 | 33610 | A | G | 249 | 597.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_254 | 33820 | T | C | 248 | 190.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_254 | 34060 | C | T | 10 | 129.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_256 | 38047 | T | C | 19 | 77.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_257 | 52644 | T | C | 24 | 34.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_257 | 52645 | C | T | 24 | 34.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_264 | 1607 | A | G | 92 | 295.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_269 | 6361 | T | C | 11 | 58.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_277 | 60791 | T | C | 16 | 33.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_277 | 82962 | T | C | 14 | 49.77 | exon | Transition | 0/1 | UDP-glucose 4-epimerase GEPI42 (EC 5.1.3.2) (Galactowaldenase) (UDP-galactose 4-epimerase) |
| Scaffold_280 | 14538 | C | T | 21 | 40.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_282 | 36956 | C | T | 11 | 289.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_288 | 82933 | T | C | 10 | 76.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_289 | 48699 | C | T | 10 | 95.77 | exon | Transition | 0/1 | Scarecrow-like protein 3 (AtSCL3) (GRAS family protein 5) (AtGRAS-5) |
| Scaffold_292 | 50479 | T | C | 22 | 83.77 | CDS | Transition | 0/1 | Unannotated |