| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_294 | 15222 | T | C | 13 | 129.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_294 | 15313 | G | A | 21 | 107.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_294 | 15321 | T | C | 18 | 188.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_296 | 22254 | G | A | 38 | 997.77 | noncoding | Transition | 0/1 | BTB/POZ domain-containing protein At2g30600 |
| Scaffold_296 | 22335 | T | C | 32 | 98.77 | noncoding | Transition | 0/1 | BTB/POZ domain-containing protein At2g30600 |
| Scaffold_296 | 24784 | G | A | 42 | 935.77 | exon | Transition | 0/1 | BTB/POZ domain-containing protein At2g30600 |
| Scaffold_296 | 24787 | C | T | 38 | 894.77 | exon | Transition | 0/1 | BTB/POZ domain-containing protein At2g30600 |
| Scaffold_296 | 68875 | A | G | 11 | 61.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_297 | 28034 | A | G | 11 | 30.77 | CDS | Transition | 0/1 | Cation-chloride cotransporter 1 (AtCCC1) (Protein HAPLESS 5) |
| Scaffold_297 | 54256 | C | T | 21 | 386.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_297 | 54271 | G | A | 18 | 261.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_298 | 71131 | A | G | 17 | 43.77 | CDS | Transition | 0/1 | 50S ribosomal protein L35, chloroplastic |
| Scaffold_299 | 3210 | A | G | 10 | 79.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_301 | 44890 | A | G | 43 | 57.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_304 | 9514 | A | G | 12 | 89.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_312 | 36230 | G | A | 32 | 343.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_325 | 27412 | C | T | 40 | 64.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_325 | 27429 | A | G | 250 | 43.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_325 | 70145 | A | G | 19 | 46.77 | CDS | Transition | 0/1 | NAC domain-containing protein 22 (ONAC022) |
| Scaffold_327 | 28966 | T | C | 33 | 53.77 | noncoding | Transition | 0/1 | Unannotated |