| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_27 | 1024374 | C | A | 13 | 105.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_27 | 1348443 | A | C | 248 | 559.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_27 | 1550908 | G | T | 27 | 31.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_27 | 1551007 | T | A | 14 | 52.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_27 | 1551008 | T | G | 13 | 55.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_27 | 1692371 | T | G | 28 | 62.77 | CDS | Transversion | 0/1 | G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3 (OsLecRK3) (EC 2.7.11.1) (OsRLCK135) |
| Scaffold_27 | 1787516 | T | A | 22 | 40.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_27 | 1808183 | C | A | 101 | 631.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_27 | 1808213 | C | A | 144 | 1817.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_27 | 1808292 | T | G | 146 | 152.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_27 | 1808321 | T | A | 113 | 2632.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_27 | 1808393 | G | T | 43 | 396.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_27 | 1808420 | T | A | 30 | 185.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_27 | 1808942 | T | G | 25 | 94.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_27 | 1808981 | A | C | 27 | 451.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_27 | 1809575 | A | T | 12 | 166.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_28 | 250036 | C | A | 11 | 30.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_28 | 464872 | A | T | 32 | 31.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_28 | 495570 | T | A | 24 | 216.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_28 | 495571 | G | C | 24 | 271.77 | exon | Transversion | 0/1 | Unannotated |