| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_575 | 66728 | G | A | 18 | 46.77 | CDS | Transition | 0/1 | Puromycin-sensitive aminopeptidase (PSA) (EC 3.4.11.14) (Cytosol alanyl aminopeptidase) (AAP-S) (Meiotic prophase aminopeptidase 1) |
| Scaffold_581 | 40467 | G | A | 42 | 72.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_591 | 50319 | G | A | 61 | 745.77 | CDS | Transition | 0/1 | Photosystem II protein D1 (PSII D1 protein) (EC 1.10.3.9) (32 kDa thylakoid membrane protein) (Photosystem II Q(B) protein) |
| Scaffold_591 | 50391 | T | C | 200 | 5788.77 | CDS | Transition | 1/1 | Photosystem II protein D1 (PSII D1 protein) (EC 1.10.3.9) (32 kDa thylakoid membrane protein) (Photosystem II Q(B) protein) |
| Scaffold_591 | 50394 | T | C | 250 | 7339.77 | CDS | Transition | 1/1 | Photosystem II protein D1 (PSII D1 protein) (EC 1.10.3.9) (32 kDa thylakoid membrane protein) (Photosystem II Q(B) protein) |
| Scaffold_591 | 50448 | A | G | 132 | 4411.77 | CDS | Transition | 1/1 | Photosystem II protein D1 (PSII D1 protein) (EC 1.10.3.9) (32 kDa thylakoid membrane protein) (Photosystem II Q(B) protein) |
| Scaffold_591 | 50478 | T | C | 103 | 3683.77 | CDS | Transition | 1/1 | Photosystem II protein D1 (PSII D1 protein) (EC 1.10.3.9) (32 kDa thylakoid membrane protein) (Photosystem II Q(B) protein) |
| Scaffold_591 | 50491 | T | C | 83 | 2783.77 | intron | Transition | 1/1 | Photosystem II protein D1 (PSII D1 protein) (EC 1.10.3.9) (32 kDa thylakoid membrane protein) (Photosystem II Q(B) protein) |
| Scaffold_597 | 242 | T | C | 36 | 41.77 | CDS | Transition | 0/1 | Calcium-transporting ATPase 4, plasma membrane-type (EC 7.2.2.10) (Ca(2+)-ATPase isoform 4) |
| Scaffold_597 | 960 | G | A | 12 | 55.77 | CDS | Transition | 0/1 | Calcium-transporting ATPase 4, plasma membrane-type (EC 7.2.2.10) (Ca(2+)-ATPase isoform 4) |
| Scaffold_599 | 37925 | C | T | 88 | 66.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_599 | 37990 | A | G | 36 | 1107.77 | exon | Transition | 1/1 | Seed trypsin/chymotrypsin inhibitor TI5-72 |
| Scaffold_618 | 68447 | T | C | 30 | 81.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_620 | 27757 | C | T | 17 | 33.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_621 | 27058 | T | C | 12 | 335.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_623 | 31353 | C | T | 15 | 332.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_629 | 27089 | C | T | 15 | 51.77 | exon | Transition | 0/1 | Hydroquinone glucosyltransferase (EC 2.4.1.218) (Arbutin synthase) |
| Scaffold_631 | 13124 | A | G | 24 | 62.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_634 | 61256 | T | C | 250 | 273.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_634 | 61260 | T | C | 250 | 9050.77 | noncoding | Transition | 1/1 | Unannotated |