| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_634 | 61425 | T | C | 250 | 8616.77 | noncoding | Transition | 1/1 | Unannotated |
| Scaffold_634 | 61473 | T | C | 250 | 204.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_634 | 61474 | A | G | 250 | 1538.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_634 | 61582 | G | A | 143 | 4603.77 | noncoding | Transition | 1/1 | Unannotated |
| Scaffold_640 | 42385 | T | C | 24 | 176.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_644 | 9546 | A | G | 20 | 293.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_647 | 66444 | A | G | 39 | 223.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_647 | 66486 | T | C | 41 | 256.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_647 | 66517 | G | A | 43 | 187.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_647 | 66558 | C | T | 38 | 576.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_647 | 66560 | C | T | 35 | 494.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_648 | 38022 | T | C | 22 | 71.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_649 | 19128 | G | A | 140 | 886.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_654 | 49483 | G | A | 46 | 38.77 | CDS | Transition | 0/1 | Ubiquitin receptor RAD23d (AtRAD23d) (Putative DNA repair protein RAD23-4) (RAD23-like protein 4) (AtRAD23-4) |
| Scaffold_654 | 49564 | A | G | 28 | 93.77 | CDS | Transition | 0/1 | Ubiquitin receptor RAD23d (AtRAD23d) (Putative DNA repair protein RAD23-4) (RAD23-like protein 4) (AtRAD23-4) |
| Scaffold_663 | 41126 | T | C | 12 | 120.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_669 | 43774 | A | G | 20 | 295.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_669 | 43789 | A | G | 31 | 624.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_669 | 43834 | G | A | 31 | 849.82 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_669 | 43843 | A | G | 35 | 387.77 | CDS | Transition | 0/1 | Unannotated |