| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_669 | 43855 | G | A | 68 | 99.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_669 | 45817 | A | G | 82 | 1684.77 | CDS | Transition | 0/1 | 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (HMG-CoA reductase 1) (EC 1.1.1.34) |
| Scaffold_669 | 45824 | T | C | 78 | 1787.77 | CDS | Transition | 0/1 | 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (HMG-CoA reductase 1) (EC 1.1.1.34) |
| Scaffold_670 | 24244 | T | C | 14 | 52.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_671 | 63499 | C | T | 14 | 36.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_673 | 4573 | A | G | 105 | 1418.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_673 | 62559 | G | A | 27 | 31.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_677 | 7963 | A | G | 40 | 38.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_679 | 44868 | G | A | 39 | 32.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_684 | 8967 | G | A | 13 | 328.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_685 | 30636 | T | C | 11 | 39.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_690 | 10685 | G | A | 17 | 60.77 | noncoding | Transition | 0/1 | Expansin-A1 (AtEXPA1) (Alpha-expansin-1) (At-EXP1) (AtEx1) (Ath-ExpAlpha-1.2) |
| Scaffold_690 | 25325 | G | A | 38 | 140.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_690 | 25435 | T | C | 155 | 216.77 | noncoding | Transition | 0/1 | Ferredoxin--NADP reductase, leaf isozyme, chloroplastic (FNR) (EC 1.18.1.2) |
| Scaffold_702 | 18313 | T | C | 10 | 52.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_703 | 18411 | A | G | 51 | 279.77 | noncoding | Transition | 0/1 | Protein DA1-related 5 |
| Scaffold_708 | 29197 | T | C | 23 | 65.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_721 | 26748 | T | C | 19 | 37.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_724 | 19469 | A | G | 21 | 46.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_724 | 36394 | C | T | 18 | 43.77 | CDS | Transition | 0/1 | Unannotated |