| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_812 | 22793 | G | A | 133 | 663.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_818 | 29317 | T | C | 36 | 911.84 | exon | Transition | 0/1 | Unannotated |
| Scaffold_837 | 55674 | G | A | 29 | 31.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_840 | 42040 | A | G | 250 | 354.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_840 | 42610 | G | A | 87 | 51.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_849 | 4788 | A | G | 22 | 43.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_859 | 9759 | A | G | 53 | 39.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_861 | 56161 | T | C | 59 | 1816.84 | exon | Transition | 1/1 | Unannotated |
| Scaffold_866 | 58420 | T | C | 59 | 79.77 | exon | Transition | 0/1 | Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 11) (AtTPS11) |
| Scaffold_866 | 58760 | T | C | 25 | 37.77 | exon | Transition | 0/1 | Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 11) (AtTPS11) |
| Scaffold_873 | 41369 | C | T | 26 | 40.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_875 | 24709 | A | G | 21 | 31.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_878 | 52503 | A | G | 13 | 353.28 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_878 | 52530 | C | T | 17 | 471.78 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_879 | 1747 | C | T | 13 | 294.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_879 | 1749 | A | G | 15 | 337.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_884 | 4237 | A | G | 11 | 42.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_889 | 43752 | T | C | 10 | 52.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_893 | 61772 | G | A | 42 | 90.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_901 | 54513 | A | G | 12 | 67.77 | CDS | Transition | 0/1 | Unannotated |