| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_1033 | 9552 | C | T | 20 | 68.77 | exon | Transition | 0/1 | Mannose-1-phosphate guanylyltransferase 1 (EC 2.7.7.13) (GDP-mannose pyrophosphorylase 1) (Protein CYTOKINESIS DEFECTIVE 1) (Protein EMBRYO DEFECTIVE 101) (Protein HYPERSENSITIVE TO AMMONIUM ION 1) (Protein SENSITIVE TO OZONE 1) (Protein VITAMIN C DEFECTI |
| Scaffold_1033 | 9579 | C | T | 12 | 140.77 | exon | Transition | 0/1 | Mannose-1-phosphate guanylyltransferase 1 (EC 2.7.7.13) (GDP-mannose pyrophosphorylase 1) (Protein CYTOKINESIS DEFECTIVE 1) (Protein EMBRYO DEFECTIVE 101) (Protein HYPERSENSITIVE TO AMMONIUM ION 1) (Protein SENSITIVE TO OZONE 1) (Protein VITAMIN C DEFECTI |
| Scaffold_1033 | 9588 | C | T | 11 | 66.77 | exon | Transition | 0/1 | Mannose-1-phosphate guanylyltransferase 1 (EC 2.7.7.13) (GDP-mannose pyrophosphorylase 1) (Protein CYTOKINESIS DEFECTIVE 1) (Protein EMBRYO DEFECTIVE 101) (Protein HYPERSENSITIVE TO AMMONIUM ION 1) (Protein SENSITIVE TO OZONE 1) (Protein VITAMIN C DEFECTI |
| Scaffold_1038 | 32430 | A | G | 17 | 46.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_1040 | 38420 | A | G | 44 | 32.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1041 | 6372 | T | C | 37 | 38.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_1043 | 25933 | C | T | 44 | 682.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_1065 | 261 | T | C | 11 | 58.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1065 | 263 | C | T | 11 | 124.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1067 | 38949 | C | T | 22 | 151.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1067 | 38964 | A | G | 24 | 196.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1076 | 48638 | A | G | 20 | 34.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_1077 | 52923 | G | A | 15 | 46.77 | CDS | Transition | 0/1 | Urea-proton symporter DUR3 (AtDUR3) (High-affinity urea active transporter DUR3) |
| Scaffold_1080 | 825 | A | G | 40 | 247.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1080 | 1319 | G | A | 20 | 117.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1081 | 386 | T | C | 23 | 216.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_1081 | 388 | T | C | 26 | 321.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_1086 | 10385 | C | T | 16 | 30.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_1096 | 51073 | G | A | 20 | 69.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_1118 | 18944 | G | A | 13 | 39.77 | CDS | Transition | 0/1 | Unannotated |