| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_28 | 495998 | C | A | 27 | 233.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_28 | 496035 | A | T | 17 | 344.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_28 | 496469 | G | T | 21 | 612.79 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_28 | 575582 | A | C | 23 | 46.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_28 | 575683 | T | G | 11 | 64.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_28 | 754768 | G | T | 11 | 64.77 | CDS | Transversion | 0/1 | Pentatricopeptide repeat-containing protein At5g39980, chloroplastic |
| Scaffold_28 | 802131 | A | T | 12 | 39.77 | intron | Transversion | 0/1 | Alpha-glucan water dikinase, chloroplastic (EC 2.7.9.4) (Starch-related protein R1) |
| Scaffold_28 | 912449 | A | C | 11 | 67.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_28 | 912450 | A | T | 11 | 67.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_28 | 964411 | T | A | 23 | 37.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_28 | 1465888 | A | C | 15 | 52.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_28 | 1828146 | T | A | 11 | 39.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_28 | 1845074 | A | T | 18 | 324.77 | intron | Transversion | 0/1 | Histone deacetylase 8 (EC 3.5.1.98) |
| Scaffold_28 | 1867698 | G | C | 31 | 704.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_29 | 1217 | A | T | 35 | 326.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_29 | 25600 | A | C | 21 | 43.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_29 | 198859 | A | C | 26 | 194.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_29 | 315092 | G | C | 59 | 744.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_29 | 598305 | T | A | 10 | 226.8 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_29 | 908133 | C | A | 35 | 74.77 | exon | Transversion | 0/1 | Unannotated |