| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_1387 | 1429 | G | A | 23 | 101.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1387 | 1445 | A | G | 22 | 144.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1387 | 7694 | T | C | 13 | 61.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1391 | 14691 | A | G | 16 | 77.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1392 | 210 | C | T | 12 | 115.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_1407 | 7883 | T | C | 27 | 467.77 | CDS | Transition | 0/1 | Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) |
| Scaffold_1407 | 7949 | A | G | 54 | 77.77 | CDS | Transition | 0/1 | Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) |
| Scaffold_1407 | 8270 | A | G | 83 | 1044.77 | CDS | Transition | 0/1 | Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) |
| Scaffold_1407 | 8352 | G | A | 112 | 986.77 | CDS | Transition | 0/1 | Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) |
| Scaffold_1407 | 8396 | A | G | 11 | 124.98 | intron | Transition | 0/1 | Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) |
| Scaffold_1421 | 14392 | A | G | 35 | 32.77 | CDS | Transition | 0/1 | Nucleolin 2 (Protein NUCLEOLIN LIKE 2) (AtNUC-L2) (Protein PARALLEL LIKE 1) (AtPARLL1) |
| Scaffold_1422 | 1083 | C | T | 10 | 42.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1422 | 1086 | A | G | 10 | 121.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1425 | 33115 | C | T | 22 | 439.79 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1425 | 33150 | A | G | 225 | 7902.77 | noncoding | Transition | 1/1 | Unannotated |
| Scaffold_1425 | 33180 | A | G | 110 | 3115.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1433 | 27646 | G | A | 10 | 196.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1433 | 27955 | T | C | 37 | 149.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_1433 | 28446 | T | C | 35 | 183.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_1439 | 48864 | A | G | 22 | 31.77 | exon | Transition | 0/1 | Unannotated |