| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_1450 | 17519 | G | A | 103 | 958.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1450 | 17528 | C | T | 77 | 609.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1454 | 14392 | T | C | 12 | 64.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1476 | 13871 | A | G | 14 | 117.77 | CDS | Transition | 0/1 | Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial (FGAM synthase) (FGAMS) (EC 6.3.5.3) (Formylglycinamide ribonucleotide amidotransferase) (FGAR amidotransferase) (FGAR-AT) (Formylglycinamide ribotide amidotransferase) |
| Scaffold_1476 | 14166 | A | G | 15 | 69.77 | CDS | Transition | 0/1 | Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial (FGAM synthase) (FGAMS) (EC 6.3.5.3) (Formylglycinamide ribonucleotide amidotransferase) (FGAR amidotransferase) (FGAR-AT) (Formylglycinamide ribotide amidotransferase) |
| Scaffold_1498 | 48690 | A | G | 40 | 55.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_1503 | 45741 | G | A | 21 | 43.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1505 | 21150 | T | C | 12 | 30.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1508 | 35190 | T | C | 71 | 243.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1527 | 7320 | T | C | 35 | 1183.77 | noncoding | Transition | 1/1 | Unannotated |
| Scaffold_1615 | 44586 | G | A | 111 | 434.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_1615 | 44643 | A | G | 60 | 843.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_1644 | 15654 | C | T | 39 | 47.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_1658 | 15193 | A | G | 22 | 31.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1721 | 4777 | C | T | 10 | 30.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1735 | 2346 | G | A | 21 | 36.77 | noncoding | Transition | 0/1 | Catalase (EC 1.11.1.6) |
| Scaffold_1735 | 32334 | G | A | 61 | 58.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1748 | 25886 | A | G | 88 | 2625.77 | noncoding | Transition | 1/1 | Unannotated |
| Scaffold_1774 | 5073 | G | A | 148 | 4607.77 | noncoding | Transition | 1/1 | Unannotated |
| Scaffold_1774 | 5108 | C | T | 89 | 309.77 | noncoding | Transition | 0/1 | Unannotated |