| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_1774 | 5118 | C | T | 28 | 50.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1777 | 39635 | C | T | 11 | 129.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1790 | 25523 | T | C | 19 | 43.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1791 | 27419 | G | A | 15 | 297.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_1802 | 41708 | A | G | 53 | 48.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_1827 | 7012 | G | A | 17 | 83.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_1827 | 12915 | G | A | 34 | 48.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1879 | 38007 | A | G | 25 | 77.77 | noncoding | Transition | 0/1 | ATPase 10, plasma membrane-type (EC 7.1.2.1) (Proton pump 10) |
| Scaffold_1901 | 14194 | A | G | 14 | 36.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1910 | 694 | T | C | 13 | 187.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1934 | 18016 | C | T | 23 | 91.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_1943 | 5950 | A | G | 71 | 172.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_1943 | 5968 | G | A | 69 | 186.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_1943 | 6143 | T | C | 18 | 135.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_1951 | 25848 | G | A | 11 | 55.77 | exon | Transition | 0/1 | Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic |
| Scaffold_1951 | 29896 | T | C | 15 | 49.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_1989 | 23567 | T | C | 65 | 153.77 | exon | Transition | 0/1 | Patatin-like protein 6 (AtPLP6) (EC 3.1.1.-) (Patatin-related phospholipase A IIIalpha) (pPLAIIIa) (Phospholipase A IIB) (AtPLAIIB) |
| Scaffold_2397 | 74452 | C | T | 204 | 5831.77 | exon | Transition | 1/1 | Unannotated |
| Scaffold_2397 | 98699 | G | A | 16 | 165.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2397 | 119636 | T | C | 29 | 424.77 | exon | Transition | 0/1 | Unannotated |