| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2397 | 119671 | A | G | 38 | 606.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2397 | 119718 | C | T | 13 | 99.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2398 | 6310 | A | G | 250 | 113.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2398 | 6490 | G | A | 13 | 95.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2398 | 77487 | T | C | 76 | 1516.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2398 | 132725 | A | G | 22 | 317.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2398 | 132740 | A | G | 37 | 629.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2400 | 18357 | T | C | 37 | 84.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2400 | 75300 | G | A | 22 | 46.77 | exon | Transition | 0/1 | ARM REPEAT PROTEIN INTERACTING WITH ABF2 (ARIA) |
| Scaffold_2401 | 57371 | A | G | 249 | 119.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2401 | 83105 | G | A | 187 | 552.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2401 | 129970 | T | C | 12 | 39.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2403 | 150842 | T | C | 57 | 1313.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2404 | 98290 | G | A | 36 | 67.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2404 | 101298 | T | C | 53 | 698.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2404 | 101360 | T | C | 168 | 1406.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2404 | 131167 | T | C | 23 | 43.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2404 | 156714 | C | T | 16 | 61.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2405 | 57635 | C | T | 14 | 257.88 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2405 | 74005 | T | C | 31 | 30.77 | exon | Transition | 0/1 | 50S ribosomal protein L29, chloroplastic (CL29) |