| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2433 | 148639 | T | C | 30 | 617.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2433 | 148753 | T | C | 35 | 814.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2437 | 48859 | C | T | 11 | 55.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2438 | 1857 | C | T | 250 | 1830.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2438 | 2669 | T | C | 18 | 49.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2438 | 2703 | A | G | 11 | 33.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2438 | 50064 | T | C | 18 | 46.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2438 | 126205 | A | G | 19 | 49.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2438 | 126493 | T | C | 29 | 90.77 | CDS | Transition | 0/1 | 40S ribosomal protein S12 |
| Scaffold_2441 | 90354 | T | C | 17 | 52.77 | CDS | Transition | 0/1 | Uncharacterized protein At5g41620 |
| Scaffold_2441 | 105030 | T | C | 48 | 761.77 | exon | Transition | 0/1 | 2-hydroxyacyl-CoA lyase (EC 4.1.-.-) (2-hydroxyphytanoyl-CoA lyase) (2-HPCL) (Oxalyl-CoA decarboxylase) |
| Scaffold_2443 | 10727 | G | A | 32 | 66.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2444 | 13756 | A | G | 47 | 60.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2445 | 25928 | A | G | 28 | 56.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2445 | 27389 | C | T | 13 | 33.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2446 | 41387 | A | G | 10 | 90.77 | noncoding | Transition | 0/1 | Phospholipase A(1) LCAT3 (EC 3.1.1.32) (Lecithin-cholesterol acyltransferase-like 3) |
| Scaffold_2447 | 48614 | A | G | 18 | 37.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2448 | 112411 | C | T | 12 | 39.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2449 | 124337 | T | C | 12 | 55.77 | exon | Transition | 0/1 | Aluminum-activated malate transporter 12 (AtALMT12) (Quick anion channel 1) |
| Scaffold_2451 | 20217 | T | C | 250 | 480.77 | CDS | Transition | 0/1 | Unannotated |