| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_29 | 908149 | T | A | 39 | 244.77 | exon | Transversion | 0/1 | Xyloglucan glycosyltransferase 4 (EC 2.4.1.-) (Cellulose synthase-like protein C4) (AtCslC4) (Xyloglucan synthase 4) |
| Scaffold_29 | 922123 | G | T | 57 | 1046.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_29 | 985496 | T | G | 32 | 75.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_29 | 1199729 | A | C | 98 | 145.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_29 | 1199846 | C | G | 14 | 369.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_29 | 1318174 | A | T | 15 | 42.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_29 | 1417020 | A | T | 21 | 34.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_29 | 1496694 | C | A | 15 | 55.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_29 | 1599968 | T | G | 14 | 43.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_29 | 1599969 | T | A | 14 | 55.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 148068 | C | G | 30 | 312.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 186085 | C | G | 21 | 37.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 186086 | T | A | 21 | 40.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 351177 | A | C | 162 | 326.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 351178 | A | T | 206 | 973.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 511988 | T | A | 20 | 43.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 514886 | T | G | 19 | 40.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 529567 | G | T | 250 | 8918.77 | exon | Transversion | 1/1 | ATP synthase delta chain, chloroplastic (F-ATPase delta chain) |
| Scaffold_30 | 655019 | A | C | 13 | 83.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 818457 | G | C | 18 | 43.77 | CDS | Transversion | 0/1 | Unannotated |