| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2556 | 16945 | G | A | 165 | 5265.77 | noncoding | Transition | 1/1 | Unannotated |
| Scaffold_2560 | 92902 | T | C | 12 | 86.77 | CDS | Transition | 0/1 | 12-oxophytodienoate reductase 2 (EC 1.3.1.42) (12-oxophytodienoate-10,11-reductase 2) (AtOPR2) (OPDA-reductase 2) (4,5-didehydrojasmonate reductase) (EC 1.3.1.-) |
| Scaffold_2566 | 90238 | G | A | 152 | 3037.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2566 | 90247 | C | T | 169 | 797.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2567 | 101576 | T | C | 11 | 36.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2568 | 19238 | A | G | 25 | 40.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2568 | 76976 | T | C | 45 | 146.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2570 | 61328 | T | C | 21 | 485.77 | CDS | Transition | 0/1 | Cell division cycle 20.1, cofactor of APC complex (AtCDC20.1) |
| Scaffold_2570 | 61397 | A | G | 74 | 241.77 | CDS | Transition | 0/1 | Cell division cycle 20.1, cofactor of APC complex (AtCDC20.1) |
| Scaffold_2570 | 61486 | G | A | 46 | 257.77 | CDS | Transition | 0/1 | Cell division cycle 20.1, cofactor of APC complex (AtCDC20.1) |
| Scaffold_2571 | 12167 | C | T | 40 | 720.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2571 | 70594 | A | G | 20 | 31.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2573 | 7244 | T | C | 18 | 49.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2573 | 7682 | A | G | 19 | 37.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2577 | 37036 | G | A | 21 | 46.77 | CDS | Transition | 0/1 | NADPH-dependent aldo-keto reductase, chloroplastic (AtChlAKR) (EC 1.1.1.-) (Aldo-keto reductase family 4 member C9) |
| Scaffold_2583 | 8695 | T | C | 249 | 1075.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2585 | 72161 | G | A | 13 | 218.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2586 | 18217 | C | T | 13 | 225.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2586 | 18302 | T | C | 12 | 106.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2586 | 18305 | C | T | 12 | 106.77 | CDS | Transition | 0/1 | Unannotated |