| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_5 | 763691 | T | A | 59 | 1778.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_5 | 763772 | A | C | 31 | 1001.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_5 | 860102 | C | G | 107 | 48.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_5 | 968859 | A | C | 20 | 49.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_5 | 968887 | C | A | 24 | 74.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_5 | 992602 | T | A | 20 | 46.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_5 | 997645 | G | T | 44 | 69.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_5 | 1265637 | C | G | 14 | 77.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_5 | 1707925 | G | T | 21 | 46.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_5 | 1715493 | A | C | 20 | 46.77 | CDS | Transversion | 0/1 | Serine/threonine-protein kinase VPS15 (EC 2.7.11.1) (Vacuolar protein sorting-associated protein 15) (AtVPS15) |
| Scaffold_6 | 174667 | A | C | 14 | 55.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_6 | 174668 | A | C | 33 | 189.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_6 | 174670 | G | C | 249 | 557.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_6 | 174702 | T | A | 250 | 232.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_6 | 174704 | G | C | 249 | 37.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_6 | 174773 | A | C | 250 | 257.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_6 | 270879 | A | C | 11 | 161.78 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_6 | 412203 | T | G | 40 | 174.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_6 | 412206 | C | A | 44 | 186.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_6 | 412521 | G | C | 198 | 2771.77 | exon | Transversion | 0/1 | Unannotated |