| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_30 | 1199016 | T | G | 21 | 34.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 1532576 | A | C | 21 | 31.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 1608018 | T | A | 47 | 60.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 1872640 | A | C | 14 | 228.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 1872658 | T | A | 14 | 195.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 1872742 | A | T | 19 | 136.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 1872822 | C | A | 14 | 58.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 1873353 | T | G | 24 | 276.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 1873759 | G | C | 17 | 251.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 1874666 | C | A | 23 | 188.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 1874759 | T | A | 24 | 236.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 1874765 | A | T | 24 | 231.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_30 | 1874945 | T | A | 23 | 60.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_31 | 766158 | A | T | 12 | 58.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_31 | 796224 | T | G | 20 | 499.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_31 | 796255 | T | G | 15 | 359.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_31 | 857421 | A | T | 17 | 46.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_31 | 1299580 | C | A | 13 | 36.77 | CDS | Transversion | 0/1 | 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic (HTPA synthase) (EC 4.3.3.7) |
| Scaffold_31 | 1563377 | A | C | 11 | 132.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_32 | 107001 | C | G | 10 | 284.56 | exon | Transversion | 0/1 | Unannotated |