| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2737 | 43496 | T | C | 14 | 292.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2737 | 43765 | C | T | 45 | 418.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2737 | 43913 | G | A | 17 | 234.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2737 | 43940 | C | T | 17 | 244.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2737 | 43972 | G | A | 11 | 106.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2742 | 62071 | C | T | 17 | 52.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2748 | 18931 | A | G | 250 | 6618.77 | exon | Transition | 0/1 | Photosystem II CP43 reaction center protein (PSII 43 kDa protein) (Protein CP-43) |
| Scaffold_2748 | 18943 | A | G | 250 | 7322.77 | exon | Transition | 0/1 | Photosystem II CP43 reaction center protein (PSII 43 kDa protein) (Protein CP-43) |
| Scaffold_2748 | 19006 | T | C | 235 | 5419.77 | exon | Transition | 0/1 | Photosystem II CP43 reaction center protein (PSII 43 kDa protein) (Protein CP-43) |
| Scaffold_2748 | 19015 | T | C | 129 | 1248.77 | exon | Transition | 0/1 | Photosystem II CP43 reaction center protein (PSII 43 kDa protein) (Protein CP-43) |
| Scaffold_2748 | 42949 | A | G | 42 | 70.78 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2752 | 8221 | T | C | 250 | 734.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2752 | 8446 | A | G | 250 | 485.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2752 | 8515 | T | C | 250 | 370.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2752 | 8535 | T | C | 246 | 736.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2753 | 37793 | A | G | 250 | 77.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2755 | 33321 | A | G | 38 | 32.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2755 | 33812 | G | A | 21 | 31.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2757 | 46651 | G | A | 250 | 538.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2757 | 46657 | G | A | 250 | 363.77 | noncoding | Transition | 0/1 | Unannotated |