| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2758 | 1711 | G | A | 81 | 39.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2763 | 48349 | A | G | 26 | 772.78 | CDS | Transition | 1/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_2763 | 53212 | A | G | 14 | 54.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2763 | 53258 | T | C | 10 | 66.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2767 | 4857 | G | A | 213 | 4948.77 | noncoding | Transition | 1/1 | Photosystem II CP43 reaction center protein (PSII 43 kDa protein) (Protein CP-43) |
| Scaffold_2775 | 49446 | T | C | 13 | 63.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2775 | 51261 | C | T | 23 | 211.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2775 | 51393 | T | C | 90 | 963.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2777 | 47421 | A | G | 13 | 285.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2778 | 53433 | C | T | 144 | 3524.77 | intron | Transition | 0/1 | 60S ribosomal protein L5, mitochondrial |
| Scaffold_2778 | 53507 | C | T | 250 | 6595.77 | CDS | Transition | 0/1 | 60S ribosomal protein L5, mitochondrial |
| Scaffold_2778 | 53510 | C | T | 250 | 6140.77 | CDS | Transition | 0/1 | 60S ribosomal protein L5, mitochondrial |
| Scaffold_2778 | 53658 | C | T | 250 | 7826.77 | CDS | Transition | 0/1 | 60S ribosomal protein L5, mitochondrial |
| Scaffold_2778 | 53853 | C | T | 250 | 7014.77 | CDS | Transition | 0/1 | 60S ribosomal protein L5, mitochondrial |
| Scaffold_2778 | 53856 | C | T | 250 | 6401.77 | CDS | Transition | 0/1 | 60S ribosomal protein L5, mitochondrial |
| Scaffold_2778 | 54048 | C | T | 250 | 2421.77 | intron | Transition | 0/1 | Ribosomal protein S14, mitochondrial |
| Scaffold_2778 | 54098 | C | T | 250 | 7795.77 | intron | Transition | 0/1 | Ribosomal protein S14, mitochondrial |
| Scaffold_2778 | 54175 | C | T | 250 | 8213.77 | CDS | Transition | 1/1 | Ribosomal protein S14, mitochondrial |
| Scaffold_2778 | 54212 | C | T | 249 | 337.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2778 | 54508 | C | T | 250 | 230.77 | intron | Transition | 0/1 | Unannotated |