| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_32 | 175087 | T | G | 14 | 52.77 | CDS | Transversion | 0/1 | DnaJ homolog subfamily C GRV2 (Protein GRAVITROPISM DEFECTIVE 2) (Protein GREEN FLUORESCENT SEED 2) (Protein KATAMARI2) |
| Scaffold_32 | 585632 | T | A | 13 | 58.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_32 | 595768 | A | C | 29 | 31.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_32 | 610750 | T | A | 28 | 40.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_32 | 695627 | G | T | 47 | 1496.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_32 | 696169 | A | T | 75 | 1745.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_32 | 696194 | T | G | 51 | 1082.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_32 | 696878 | C | A | 110 | 3230.05 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_32 | 696880 | A | T | 114 | 3228.29 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_32 | 697143 | G | C | 198 | 4475.94 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_32 | 697172 | T | G | 161 | 4612.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_32 | 697744 | C | A | 89 | 3256.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_32 | 697757 | C | A | 33 | 1142.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_32 | 698327 | T | G | 15 | 384.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_32 | 863530 | A | C | 29 | 210.77 | CDS | Transversion | 0/1 | Chaperone protein ClpC, chloroplastic (ATP-dependent Clp protease ATP-binding subunit ClpC homolog) (Casein lytic proteinase C) |
| Scaffold_32 | 863581 | C | G | 39 | 317.77 | CDS | Transversion | 0/1 | Chaperone protein ClpC, chloroplastic (ATP-dependent Clp protease ATP-binding subunit ClpC homolog) (Casein lytic proteinase C) |
| Scaffold_32 | 863584 | G | C | 33 | 228.77 | CDS | Transversion | 0/1 | Chaperone protein ClpC, chloroplastic (ATP-dependent Clp protease ATP-binding subunit ClpC homolog) (Casein lytic proteinase C) |
| Scaffold_32 | 979484 | A | C | 24 | 34.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_32 | 979485 | G | T | 24 | 37.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_32 | 979585 | C | G | 12 | 55.77 | CDS | Transversion | 0/1 | Unannotated |