| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2797 | 30719 | A | G | 55 | 838.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2801 | 2439 | G | A | 15 | 63.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2801 | 3277 | G | A | 29 | 130.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2801 | 3283 | A | G | 29 | 411.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2801 | 3621 | G | A | 15 | 146.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2801 | 3650 | C | T | 11 | 120.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2801 | 3652 | C | T | 11 | 118.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2801 | 4387 | G | A | 22 | 91.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2802 | 42907 | A | G | 13 | 55.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2805 | 25038 | A | G | 119 | 75.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2805 | 25161 | C | T | 68 | 1451.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2805 | 25308 | C | T | 217 | 4328.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2805 | 25841 | G | A | 23 | 225.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2808 | 2519 | G | A | 18 | 108.77 | CDS | Transition | 0/1 | Nuclear pore complex protein NUP1 (Nuclear pore complex protein NUP136) (Nucleoporin 1) (Nucleoporin 136) |
| Scaffold_2808 | 2630 | T | C | 33 | 354.77 | CDS | Transition | 0/1 | Nuclear pore complex protein NUP1 (Nuclear pore complex protein NUP136) (Nucleoporin 1) (Nucleoporin 136) |
| Scaffold_2808 | 39516 | G | C,T | 27 | 1124.77 | intron | Transition | 1/2 | Unannotated |
| Scaffold_2809 | 5073 | A | G | 10 | 135.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2809 | 52110 | C | T | 17 | 43.77 | noncoding | Transition | 0/1 | NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic (EC 7.1.1.-) (NAD(P)H dehydrogenase subunit 6) (NADH-plastoquinone oxidoreductase subunit 6) |
| Scaffold_2811 | 8356 | C | T | 12 | 79.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_2811 | 9018 | C | T | 42 | 876.77 | exon | Transition | 0/1 | Unannotated |