| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2885 | 681 | C | T | 82 | 2309.77 | CDS | Transition | 1/1 | Unannotated |
| Scaffold_2886 | 52158 | C | T | 115 | 978.77 | noncoding | Transition | 0/1 | NAD(P)H-quinone oxidoreductase chain 4, chloroplastic (EC 7.1.1.-) (NAD(P)H dehydrogenase, chain 4) (NADH-plastoquinone oxidoreductase chain 4) |
| Scaffold_2888 | 19632 | T | C | 83 | 264.77 | exon | Transition | 0/1 | 60S ribosomal protein L6-3 |
| Scaffold_2888 | 19651 | A | G | 143 | 963.77 | exon | Transition | 0/1 | 60S ribosomal protein L6-3 |
| Scaffold_2888 | 19759 | A | G | 247 | 2398.77 | exon | Transition | 0/1 | 60S ribosomal protein L6-3 |
| Scaffold_2888 | 19797 | C | T | 198 | 1539.77 | exon | Transition | 0/1 | 60S ribosomal protein L6-3 |
| Scaffold_2888 | 45401 | C | T | 31 | 45.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2888 | 45445 | C | T | 79 | 34.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2888 | 45514 | T | C | 189 | 246.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2888 | 45593 | C | T | 93 | 44.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2888 | 45667 | T | C | 34 | 31.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2890 | 39660 | T | C | 250 | 351.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2890 | 45867 | C | T | 109 | 292.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2890 | 46344 | C | T | 70 | 1149.77 | exon | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 4 (EC 7.1.1.2) (NADH dehydrogenase subunit 4) |
| Scaffold_2890 | 46359 | C | T | 51 | 894.77 | exon | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 4 (EC 7.1.1.2) (NADH dehydrogenase subunit 4) |
| Scaffold_2890 | 46392 | C | T | 33 | 284.77 | exon | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 4 (EC 7.1.1.2) (NADH dehydrogenase subunit 4) |
| Scaffold_2890 | 46422 | C | T | 22 | 201.77 | exon | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 4 (EC 7.1.1.2) (NADH dehydrogenase subunit 4) |
| Scaffold_2890 | 46473 | C | T | 19 | 299.77 | exon | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 4 (EC 7.1.1.2) (NADH dehydrogenase subunit 4) |
| Scaffold_2890 | 46481 | C | T | 49 | 511.77 | exon | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 4 (EC 7.1.1.2) (NADH dehydrogenase subunit 4) |
| Scaffold_2890 | 46512 | C | T | 250 | 6648.77 | exon | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 4 (EC 7.1.1.2) (NADH dehydrogenase subunit 4) |