| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2890 | 52057 | C | T | 161 | 3629.77 | intron | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 4 (EC 7.1.1.2) (NADH dehydrogenase subunit 4) |
| Scaffold_2890 | 52153 | C | T | 112 | 2286.77 | CDS | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 4 (EC 7.1.1.2) (NADH dehydrogenase subunit 4) |
| Scaffold_2890 | 52172 | C | T | 41 | 42.77 | CDS | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 4 (EC 7.1.1.2) (NADH dehydrogenase subunit 4) |
| Scaffold_2890 | 52196 | C | T | 26 | 402.77 | CDS | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 4 (EC 7.1.1.2) (NADH dehydrogenase subunit 4) |
| Scaffold_2890 | 52229 | C | T | 136 | 3732.77 | CDS | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 4 (EC 7.1.1.2) (NADH dehydrogenase subunit 4) |
| Scaffold_2890 | 52235 | C | T | 170 | 4450.77 | CDS | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 4 (EC 7.1.1.2) (NADH dehydrogenase subunit 4) |
| Scaffold_2890 | 52379 | C | T | 179 | 4915.77 | CDS | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 4 (EC 7.1.1.2) (NADH dehydrogenase subunit 4) |
| Scaffold_2890 | 52397 | C | T | 83 | 2153.77 | CDS | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 4 (EC 7.1.1.2) (NADH dehydrogenase subunit 4) |
| Scaffold_2890 | 52579 | C | T | 116 | 104.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2890 | 52934 | C | T | 147 | 3204.83 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2895 | 11817 | A | G | 10 | 90.28 | exon | Transition | 1/1 | Unannotated |
| Scaffold_2895 | 43385 | G | A | 97 | 1508.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2905 | 45190 | A | G | 250 | 755.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2905 | 45268 | A | G | 250 | 426.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2905 | 45309 | A | G | 250 | 42.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2905 | 45310 | T | C | 250 | 104.77 | noncoding | Transition | 0/1 | Photosystem II reaction center protein M (PSII-M) |
| Scaffold_2905 | 45322 | T | C | 250 | 1575.77 | noncoding | Transition | 0/1 | Photosystem II reaction center protein M (PSII-M) |
| Scaffold_2905 | 45323 | T | C | 250 | 1129.77 | noncoding | Transition | 0/1 | Photosystem II reaction center protein M (PSII-M) |
| Scaffold_2905 | 45325 | T | C | 250 | 704.77 | noncoding | Transition | 0/1 | Photosystem II reaction center protein M (PSII-M) |
| Scaffold_2905 | 45341 | T | C | 250 | 544.77 | noncoding | Transition | 0/1 | Photosystem II reaction center protein M (PSII-M) |