| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2930 | 34440 | C | T | 205 | 37.77 | noncoding | Transition | 0/1 | DNA-directed RNA polymerase subunit beta (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta) (RNA polymerase subunit beta) |
| Scaffold_2930 | 37636 | A | G | 29 | 62.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2932 | 15023 | A | G | 250 | 33.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2932 | 15044 | T | C | 250 | 90.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2932 | 15065 | T | C | 249 | 227.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2933 | 2563 | G | A | 20 | 64.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2933 | 17977 | A | G | 15 | 266.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2934 | 39081 | C | T | 26 | 395.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2938 | 44587 | G | A | 39 | 271.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2938 | 44786 | G | A | 74 | 134.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2938 | 44816 | G | A | 135 | 133.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2938 | 45649 | G | A | 69 | 232.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2938 | 45808 | G | A | 250 | 5707.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2938 | 45878 | G | A | 250 | 1705.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2938 | 46093 | G | A | 201 | 722.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2938 | 46119 | G | A | 185 | 605.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2938 | 46234 | G | A | 174 | 2182.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2938 | 46249 | G | A | 217 | 3253.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2938 | 46704 | G | A | 181 | 379.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2938 | 46862 | G | A | 57 | 49.77 | noncoding | Transition | 0/1 | Unannotated |