| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2964 | 16413 | C | T | 78 | 1206.77 | noncoding | Transition | 0/1 | ATP synthase protein MI25 (ORF 25) |
| Scaffold_2974 | 26670 | T | C | 59 | 91.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_2976 | 49395 | C | T | 13 | 63.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2979 | 21078 | G | A | 247 | 2127.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_2987 | 986 | T | C | 28 | 31.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_2991 | 47109 | G | A | 34 | 752.9 | exon | Transition | 1/1 | Unannotated |
| Scaffold_2993 | 23870 | C | T | 246 | 7423.77 | noncoding | Transition | 0/1 | ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) |
| Scaffold_3007 | 23461 | C | T | 250 | 964.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3007 | 23546 | C | T | 212 | 2575.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3010 | 22332 | A | G | 16 | 72.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3010 | 49611 | T | C | 250 | 238.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3010 | 49612 | T | C | 250 | 228.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3010 | 49619 | T | C | 250 | 862.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3010 | 49620 | T | C | 250 | 351.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3010 | 49642 | A | G | 249 | 1143.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3010 | 49654 | A | G | 250 | 786.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3010 | 49696 | A | G | 250 | 363.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3010 | 49704 | A | G | 247 | 108.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3010 | 49705 | T | C | 250 | 84.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3010 | 49742 | T | C | 250 | 130.77 | noncoding | Transition | 0/1 | Unannotated |