| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3029 | 8140 | G | A | 93 | 496.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3032 | 25523 | G | A | 10 | 141.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3034 | 44782 | T | C | 250 | 37.77 | noncoding | Transition | 0/1 | Uncharacterized protein ORF91 |
| Scaffold_3037 | 8046 | G | A | 62 | 2071.77 | noncoding | Transition | 1/1 | Unannotated |
| Scaffold_3037 | 8048 | T | C | 87 | 472.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3037 | 22381 | C | T | 10 | 111.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3037 | 24994 | A | G | 10 | 30.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3039 | 54028 | C | T | 51 | 923.77 | CDS | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 54057 | G | A | 30 | 33.77 | CDS | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 54066 | A | G | 26 | 131.77 | CDS | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 54884 | C | T | 86 | 145.77 | CDS | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 54959 | T | A,G | 24 | 1762.77 | intron | Transition | 1/2 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 54973 | A | G | 49 | 1273.77 | intron | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 55501 | C | T | 36 | 893.77 | CDS | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 55555 | C | T | 28 | 204.77 | CDS | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 55598 | T | C | 31 | 64.77 | CDS | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 55890 | C | T | 41 | 202.77 | CDS | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 55943 | G | A | 38 | 107.77 | CDS | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 55977 | C | T | 21 | 150.77 | CDS | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3040 | 25826 | C | T | 152 | 2139.77 | intron | Transition | 0/1 | Unannotated |