| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3090 | 26120 | A | G | 250 | 96.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3090 | 26130 | A | G | 250 | 438.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3090 | 26131 | T | C | 250 | 765.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3095 | 17785 | G | A | 250 | 1408.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3099 | 18148 | G | A | 17 | 97.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3099 | 40343 | T | C | 61 | 194.77 | noncoding | Transition | 0/1 | Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic (ACCase subunit beta) (Acetyl-CoA carboxylase carboxyltransferase subunit beta) (EC 2.1.3.15) |
| Scaffold_3099 | 40438 | C | T | 250 | 7167.77 | noncoding | Transition | 0/1 | Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic (ACCase subunit beta) (Acetyl-CoA carboxylase carboxyltransferase subunit beta) (EC 2.1.3.15) |
| Scaffold_3102 | 44734 | A | G | 250 | 112.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3103 | 42207 | T | C | 250 | 1527.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3103 | 42688 | C | T | 31 | 676.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3103 | 42689 | T | C | 27 | 552.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3108 | 21252 | G | A | 132 | 1705.77 | exon | Transition | 0/1 | Ribonuclease TUDOR 1 (AtTudor1) (TUDOR-SN protein 1) (EC 3.1.-.-) |
| Scaffold_3108 | 21523 | G | A | 69 | 40.77 | exon | Transition | 0/1 | Ribonuclease TUDOR 1 (AtTudor1) (TUDOR-SN protein 1) (EC 3.1.-.-) |
| Scaffold_3108 | 21524 | A | G | 69 | 48.77 | exon | Transition | 0/1 | Ribonuclease TUDOR 1 (AtTudor1) (TUDOR-SN protein 1) (EC 3.1.-.-) |
| Scaffold_3108 | 21692 | A | G | 28 | 77.77 | CDS | Transition | 0/1 | Ribonuclease TUDOR 1 (AtTudor1) (TUDOR-SN protein 1) (EC 3.1.-.-) |
| Scaffold_3108 | 21698 | A | G | 33 | 411.77 | CDS | Transition | 0/1 | Ribonuclease TUDOR 1 (AtTudor1) (TUDOR-SN protein 1) (EC 3.1.-.-) |
| Scaffold_3108 | 21794 | T | C | 58 | 398.77 | CDS | Transition | 0/1 | Ribonuclease TUDOR 1 (AtTudor1) (TUDOR-SN protein 1) (EC 3.1.-.-) |
| Scaffold_3108 | 21797 | C | T | 54 | 294.77 | CDS | Transition | 0/1 | Ribonuclease TUDOR 1 (AtTudor1) (TUDOR-SN protein 1) (EC 3.1.-.-) |
| Scaffold_3108 | 22016 | G | A | 128 | 1250.77 | CDS | Transition | 0/1 | Ribonuclease TUDOR 1 (AtTudor1) (TUDOR-SN protein 1) (EC 3.1.-.-) |
| Scaffold_3108 | 22055 | T | C | 165 | 2075.77 | CDS | Transition | 0/1 | Ribonuclease TUDOR 1 (AtTudor1) (TUDOR-SN protein 1) (EC 3.1.-.-) |