| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3117 | 31578 | C | T | 68 | 56.77 | noncoding | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 1 (EC 7.1.1.2) (NADH dehydrogenase subunit 1) |
| Scaffold_3117 | 31599 | C | T | 100 | 1081.77 | noncoding | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 1 (EC 7.1.1.2) (NADH dehydrogenase subunit 1) |
| Scaffold_3117 | 31667 | C | T | 147 | 3084.77 | noncoding | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 1 (EC 7.1.1.2) (NADH dehydrogenase subunit 1) |
| Scaffold_3117 | 31679 | C | T | 153 | 815.77 | noncoding | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 1 (EC 7.1.1.2) (NADH dehydrogenase subunit 1) |
| Scaffold_3117 | 31742 | C | T | 65 | 1869.77 | noncoding | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 1 (EC 7.1.1.2) (NADH dehydrogenase subunit 1) |
| Scaffold_3117 | 31772 | C | T | 165 | 4412.77 | noncoding | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 1 (EC 7.1.1.2) (NADH dehydrogenase subunit 1) |
| Scaffold_3117 | 31797 | C | T | 240 | 6449.77 | noncoding | Transition | 1/1 | NADH-ubiquinone oxidoreductase chain 1 (EC 7.1.1.2) (NADH dehydrogenase subunit 1) |
| Scaffold_3118 | 54649 | T | C | 250 | 149.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3118 | 54655 | A | G | 250 | 1013.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3122 | 47938 | C | T | 18 | 30.77 | noncoding | Transition | 0/1 | Photosystem II D2 protein (PSII D2 protein) (EC 1.10.3.9) (Photosystem Q(A) protein) |
| Scaffold_3123 | 60225 | T | C | 250 | 905.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3128 | 124 | T | C | 26 | 163.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3128 | 176 | A | G | 250 | 8056.03 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3128 | 299 | G | A | 245 | 1460.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3128 | 412 | T | C | 250 | 145.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3128 | 503 | C | T | 148 | 1589.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3128 | 566 | C | T | 71 | 597.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3128 | 730 | T | C | 38 | 246.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3128 | 766 | G | A | 25 | 461.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3130 | 4512 | C | T | 39 | 113.77 | noncoding | Transition | 0/1 | Unannotated |