| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3131 | 57387 | G | A | 20 | 395.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3131 | 57454 | C | T | 10 | 180.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3132 | 27249 | T | C | 38 | 132.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3132 | 27260 | T | C | 40 | 823.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3132 | 27261 | A | G | 40 | 173.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3132 | 27323 | T | C | 21 | 432.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3135 | 34187 | T | C | 143 | 5568.77 | noncoding | Transition | 1/1 | Unannotated |
| Scaffold_3136 | 43183 | T | C | 250 | 125.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3136 | 44000 | C | T | 65 | 241.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3138 | 15079 | A | G | 162 | 81.28 | noncoding | Transition | 1/1 | DNA-directed RNA polymerase subunit alpha (PEP) (EC 2.7.7.6) (Plastid-encoded RNA polymerase subunit alpha) (RNA polymerase subunit alpha) |
| Scaffold_3138 | 15080 | G | A | 158 | 73.28 | noncoding | Transition | 1/1 | DNA-directed RNA polymerase subunit alpha (PEP) (EC 2.7.7.6) (Plastid-encoded RNA polymerase subunit alpha) (RNA polymerase subunit alpha) |
| Scaffold_3139 | 44617 | T | C | 249 | 6507.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3139 | 44660 | T | C | 250 | 1514.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3139 | 44872 | T | C | 65 | 243.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3144 | 9005 | T | C | 17 | 37.77 | CDS | Transition | 0/1 | Protein Ycf2 |
| Scaffold_3144 | 49268 | A | G | 15 | 219.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3144 | 49283 | T | C | 14 | 107.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3144 | 49344 | G | A | 26 | 364.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3144 | 49473 | A | G | 42 | 1098.77 | CDS | Transition | 1/1 | Unannotated |
| Scaffold_3144 | 49599 | G | A | 11 | 230.77 | CDS | Transition | 0/1 | Unannotated |