| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3144 | 49625 | T | C | 15 | 97.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3144 | 49626 | T | C | 17 | 310.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3144 | 49665 | G | A | 25 | 74.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3155 | 41813 | G | A | 250 | 8630.77 | noncoding | Transition | 1/1 | DNA-directed RNA polymerase subunit beta' (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta') (RNA polymerase subunit beta') |
| Scaffold_3155 | 43885 | G | A | 180 | 262.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3155 | 45783 | T | C | 14 | 52.77 | CDS | Transition | 0/1 | ATPase family AAA domain-containing protein FIGL1 (AAA-ATPase FIDGETIN-LIKE 1) (EC 3.6.4.-) |
| Scaffold_3162 | 42837 | T | C | 14 | 265.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3163 | 33369 | C | T | 13 | 311.18 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3163 | 43810 | C | T | 11 | 36.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3165 | 8001 | A | G | 250 | 71.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3165 | 8006 | A | G | 250 | 169.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3165 | 8007 | T | C | 250 | 494.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3165 | 8037 | T | C | 250 | 186.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3165 | 42418 | T | C | 247 | 544.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3165 | 42433 | T | C | 250 | 194.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3165 | 42465 | T | C | 249 | 203.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3165 | 42466 | T | C | 250 | 428.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3165 | 42505 | A | G | 250 | 1106.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3165 | 42521 | T | C | 250 | 38.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3166 | 22029 | T | C | 249 | 1344.77 | intron | Transition | 0/1 | Unannotated |