| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3222 | 81259 | C | T | 250 | 1257.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3222 | 81691 | C | T | 249 | 4110.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3222 | 81746 | C | T | 250 | 5341.77 | CDS | Transition | 0/1 | 40S ribosomal protein S10, mitochondrial |
| Scaffold_3222 | 81760 | C | T | 250 | 7100.77 | CDS | Transition | 0/1 | Ribosomal protein S10, mitochondrial |
| Scaffold_3222 | 81802 | C | T | 250 | 1045.77 | exon | Transition | 0/1 | Ribosomal protein S10, mitochondrial |
| Scaffold_3222 | 81982 | C | T | 250 | 6688.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3222 | 82003 | C | T | 250 | 6069.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3222 | 82143 | C | T | 250 | 285.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3225 | 15166 | C | T | 13 | 30.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3225 | 15199 | G | A | 13 | 110.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3225 | 15270 | G | A | 15 | 33.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3225 | 15301 | C | T | 12 | 160.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3225 | 15317 | C | T | 13 | 157.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3225 | 15368 | C | T | 12 | 30.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3225 | 15383 | C | T | 13 | 33.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3225 | 15426 | G | A | 14 | 75.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3226 | 48876 | A | G | 18 | 49.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3228 | 29636 | T | C | 12 | 84.77 | exon | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3229 | 28370 | G | A | 12 | 197.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3229 | 28527 | A | G | 10 | 129.77 | CDS | Transition | 0/1 | Unannotated |