| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3230 | 39853 | G | A | 39 | 402.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3230 | 39862 | G | A | 32 | 147.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3230 | 40042 | G | A | 27 | 400.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3230 | 40048 | G | A | 37 | 717.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3230 | 40903 | G | A | 25 | 224.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3230 | 41042 | G | A | 250 | 384.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3230 | 41081 | G | A | 249 | 3492.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3230 | 41201 | G | A | 250 | 3084.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3230 | 41513 | G | A | 242 | 5067.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3230 | 41554 | G | A | 160 | 3273.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3230 | 41584 | G | A | 161 | 2898.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3230 | 41624 | G | A | 240 | 6077.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3230 | 41654 | G | A | 238 | 4242.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3231 | 44877 | G | A | 30 | 67.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3232 | 16701 | C | T | 49 | 883.77 | exon | Transition | 0/1 | DNA-directed RNA polymerase subunit beta (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta) (RNA polymerase subunit beta) |
| Scaffold_3234 | 21447 | T | C | 34 | 34.77 | CDS | Transition | 0/1 | Probable methyltransferase PMT16 (EC 2.1.1.-) |
| Scaffold_3236 | 33969 | G | A | 24 | 313.77 | exon | Transition | 0/1 | Cellulose synthase-like protein D3 (AtCslD3) (EC 2.4.1.-) (Protein KOJAK) |
| Scaffold_3236 | 35063 | G | A | 66 | 701.77 | CDS | Transition | 0/1 | Cellulose synthase-like protein D3 (AtCslD3) (EC 2.4.1.-) (Protein KOJAK) |
| Scaffold_3236 | 35110 | C | T | 58 | 301.77 | CDS | Transition | 0/1 | Cellulose synthase-like protein D3 (AtCslD3) (EC 2.4.1.-) (Protein KOJAK) |
| Scaffold_3236 | 35152 | A | G | 34 | 378.77 | CDS | Transition | 0/1 | Cellulose synthase-like protein D3 (AtCslD3) (EC 2.4.1.-) (Protein KOJAK) |