| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3248 | 34890 | C | T | 249 | 3367.77 | CDS | Transition | 0/1 | NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 (EC 1.6.99.3) (EC 7.1.1.2) (NADH dehydrogenase subunit 7) |
| Scaffold_3248 | 34910 | C | T | 219 | 1265.77 | CDS | Transition | 0/1 | NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 (EC 1.6.99.3) (EC 7.1.1.2) (NADH dehydrogenase subunit 7) |
| Scaffold_3248 | 34917 | C | T | 230 | 254.77 | CDS | Transition | 0/1 | NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 (EC 1.6.99.3) (EC 7.1.1.2) (NADH dehydrogenase subunit 7) |
| Scaffold_3248 | 34982 | C | T | 107 | 270.77 | intron | Transition | 0/1 | NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 (EC 1.6.99.3) (EC 7.1.1.2) (NADH dehydrogenase subunit 7) |
| Scaffold_3248 | 35001 | C | T | 114 | 604.77 | intron | Transition | 0/1 | NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 (EC 1.6.99.3) (EC 7.1.1.2) (NADH dehydrogenase subunit 7) |
| Scaffold_3248 | 35010 | C | T | 221 | 3490.77 | intron | Transition | 0/1 | NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 (EC 1.6.99.3) (EC 7.1.1.2) (NADH dehydrogenase subunit 7) |
| Scaffold_3248 | 35049 | C | T | 250 | 7349.77 | CDS | Transition | 0/1 | NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 (EC 1.6.99.3) (EC 7.1.1.2) (NADH dehydrogenase subunit 7) |
| Scaffold_3248 | 35244 | C | T | 250 | 8299.77 | CDS | Transition | 1/1 | NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 (EC 1.6.99.3) (EC 7.1.1.2) (NADH dehydrogenase subunit 7) |
| Scaffold_3248 | 35345 | C | T | 167 | 33.77 | intron | Transition | 0/1 | NAD(P)H-quinone oxidoreductase subunit H, chloroplastic (EC 7.1.1.-) (NAD(P)H dehydrogenase subunit H) (NADH-plastoquinone oxidoreductase 49 kDa subunit) (NADH-plastoquinone oxidoreductase subunit H) |
| Scaffold_3249 | 18073 | C | T | 23 | 468.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3249 | 18146 | C | T | 34 | 621.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3249 | 18169 | G | A | 15 | 334.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3251 | 472 | C | T | 12 | 194.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3252 | 38964 | G | A | 12 | 75.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3253 | 41849 | T | C | 12 | 108.77 | exon | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3253 | 41940 | C | T | 36 | 66.77 | exon | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3258 | 36788 | C | T | 14 | 101.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3258 | 36824 | A | G | 11 | 151.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3258 | 36827 | G | A | 10 | 63.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3258 | 36842 | A | G | 10 | 152.77 | intron | Transition | 0/1 | Unannotated |