| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3260 | 13458 | C | T | 250 | 1148.77 | noncoding | Transition | 0/1 | NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic (EC 7.1.1.-) (NAD(P)H dehydrogenase, subunit 2 B) (NADH-plastoquinone oxidoreductase subunit 2 B) |
| Scaffold_3264 | 16243 | C | T | 11 | 39.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3264 | 27443 | C | T | 24 | 39.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3264 | 27751 | C | T | 14 | 353.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3264 | 27777 | C | T | 23 | 46.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3268 | 35897 | C | T | 228 | 110.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3268 | 36187 | C | T | 250 | 39.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3268 | 36267 | G | A | 250 | 104.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3268 | 36601 | C | T | 248 | 6420.77 | exon | Transition | 0/1 | Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) |
| Scaffold_3268 | 36603 | C | T | 250 | 6569.77 | exon | Transition | 0/1 | Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) |
| Scaffold_3268 | 36693 | C | T | 249 | 8318.77 | exon | Transition | 1/1 | Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) |
| Scaffold_3268 | 36718 | C | T | 250 | 8707.77 | exon | Transition | 1/1 | Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) |
| Scaffold_3268 | 36794 | C | T | 250 | 1699.77 | exon | Transition | 0/1 | Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) |
| Scaffold_3268 | 36819 | C | T | 250 | 6594.77 | exon | Transition | 0/1 | Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) |
| Scaffold_3268 | 36883 | C | T | 248 | 7095.77 | exon | Transition | 1/1 | Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) |
| Scaffold_3268 | 36916 | C | T | 204 | 4873.77 | exon | Transition | 0/1 | Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) |
| Scaffold_3268 | 36997 | C | T | 250 | 7668.77 | exon | Transition | 1/1 | Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) |
| Scaffold_3268 | 37072 | C | T | 250 | 8634.77 | exon | Transition | 1/1 | Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) |
| Scaffold_3268 | 37138 | C | T | 173 | 5558.77 | exon | Transition | 1/1 | Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) |
| Scaffold_3268 | 37161 | C | T | 81 | 1545.77 | exon | Transition | 0/1 | Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide II) |