| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3290 | 61482 | T | C | 15 | 43.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3299 | 27138 | A | G | 250 | 349.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3299 | 27175 | A | G | 250 | 968.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3299 | 27203 | T | C | 250 | 387.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3299 | 27205 | T | C | 249 | 557.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3299 | 27220 | A | G | 247 | 40.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3299 | 27255 | T | C | 250 | 141.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3299 | 27348 | T | C | 248 | 1258.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3299 | 27350 | C | T | 245 | 196.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3300 | 5905 | T | C | 21 | 59.77 | exon | Transition | 0/1 | UDP-glucose 6-dehydrogenase 1 (UDP-Glc dehydrogenase 1) (UDP-GlcDH 1) (UDPGDH 1) (EC 1.1.1.22) (Gm-UGD1) |
| Scaffold_3300 | 5906 | A | G | 19 | 176.77 | exon | Transition | 0/1 | UDP-glucose 6-dehydrogenase 1 (UDP-Glc dehydrogenase 1) (UDP-GlcDH 1) (UDPGDH 1) (EC 1.1.1.22) (Gm-UGD1) |
| Scaffold_3301 | 331 | G | A | 14 | 30.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3301 | 950 | G | A | 211 | 5406.77 | exon | Transition | 1/1 | Unannotated |
| Scaffold_3301 | 962 | G | A | 236 | 5114.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3301 | 1026 | G | A | 233 | 2152.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3301 | 1161 | G | A | 249 | 272.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3301 | 1178 | G | A | 242 | 1554.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3301 | 1316 | G | A | 250 | 698.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3301 | 36377 | A | G | 10 | 222.84 | exon | Transition | 1/1 | Cellulose synthase-like protein B4 (AtCslB4) (EC 2.4.1.-) |
| Scaffold_3302 | 3215 | A | G | 63 | 485.77 | CDS | Transition | 0/1 | Unannotated |