| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3326 | 12466 | A | G | 92 | 494.77 | CDS | Transition | 0/1 | COP1-interactive protein 1 |
| Scaffold_3326 | 12528 | C | T | 117 | 690.77 | CDS | Transition | 0/1 | COP1-interactive protein 1 |
| Scaffold_3326 | 12613 | T | C | 31 | 317.77 | CDS | Transition | 0/1 | COP1-interactive protein 1 |
| Scaffold_3326 | 12781 | A | G | 14 | 30.77 | CDS | Transition | 0/1 | COP1-interactive protein 1 |
| Scaffold_3326 | 12841 | C | T | 16 | 179.77 | CDS | Transition | 0/1 | COP1-interactive protein 1 |
| Scaffold_3326 | 12861 | T | C | 18 | 98.77 | CDS | Transition | 0/1 | COP1-interactive protein 1 |
| Scaffold_3326 | 44106 | T | C | 250 | 944.77 | noncoding | Transition | 0/1 | DNA-directed RNA polymerase subunit alpha (PEP) (EC 2.7.7.6) (Plastid-encoded RNA polymerase subunit alpha) (RNA polymerase subunit alpha) |
| Scaffold_3328 | 27772 | C | T | 17 | 120.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3328 | 46773 | C | T | 244 | 5400.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3330 | 17335 | C | T | 82 | 1563.78 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3333 | 48161 | C | T | 19 | 67.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3340 | 42675 | C | T | 24 | 122.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3340 | 42703 | G | A | 28 | 42.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3340 | 42824 | A | G | 13 | 118.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3350 | 79886 | T | C | 250 | 811.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3350 | 79898 | A | G | 250 | 93.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3350 | 79902 | T | C | 250 | 578.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3350 | 79931 | T | C | 250 | 965.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3350 | 79932 | T | C | 250 | 850.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3350 | 79940 | T | C | 247 | 71.77 | noncoding | Transition | 0/1 | Unannotated |